Survival-associated eQTLs across different cancer types
We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
|
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
|---|---|---|---|---|---|---|---|---|---|
| KICH | rs886953 | chr16:2882267 | C/G | 5.48E-7 | 65 | 27.2 | 74.32 | 60.5 | KM Plot |
| KICH | rs9318778 | chr13:82078918 | A/T | 1.01E-6 | 62 | 64.03 | 75.97 | 16.9 | KM Plot |
| KICH | rs9426486 | chr1:4989251 | G/A | 5.44E-6 | 63 | 66.78 | 13.88 | 30.67 | KM Plot |
| KICH | rs9426488 | chr1:4994367 | C/T | 5.44E-6 | 63 | 66.78 | 13.88 | 30.67 | KM Plot |
| KICH | rs9426508 | chr1:4990602 | C/T | 5.44E-6 | 63 | 66.78 | 13.88 | 30.67 | KM Plot |
| KICH | rs9426509 | chr1:4990905 | G/T | 5.44E-6 | 63 | 66.78 | 13.88 | 30.67 | KM Plot |
| KICH | rs9426510 | chr1:4993724 | G/A | 5.44E-6 | 63 | 66.78 | 13.88 | 30.67 | KM Plot |
| KICH | rs9426512 | chr1:4993761 | G/A | 5.44E-6 | 63 | 66.78 | 13.88 | 30.67 | KM Plot |
| KICH | rs9471160 | chr6:39742528 | T/C | 0.000104 | 63 | 66.78 | 17.32 | 87.77 | KM Plot |
| KICH | rs9545735 | chr13:82068956 | A/G | 1.01E-6 | 62 | 65.47 | 75.97 | 16.9 | KM Plot |
| KICH | rs9545742 | chr13:82079546 | G/A | 7.39E-7 | 63 | 64.03 | 60.72 | 16.9 | KM Plot |
| KICH | rs9545764 | chr13:82106227 | T/G | 6.13E-7 | 64 | 64.83 | 53.87 | 16.9 | KM Plot |
| KICH | rs9702382 | chr10:53040795 | G/C | 4.52E-6 | 63 | 68.13 | 21.3 | 25.13 | KM Plot |
| KICH | rs9794428 | chr10:119570713 | G/A | 1.79E-6 | 64 | 30.67 | 10.83 | 68.13 | KM Plot |
| KIRC | rs10012865 | chr4:68294199 | C/T | 4.63E-5 | 507 | 18.4 | 43.42 | 37.18 | KM Plot |